Read 44100 records [1] "Analyzing 151011b.mr" [1] "Reading in data" Read 11025 records [1] "Approximately 49 jogs" [1] "Fixing CO2 glitches" Read 11025 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder ND12042" [1] "Position 2 Cylinder CA07857" [1] "Position 3 Cylinder D273561" [1] "Position 4 Cylinder D743657" [1] "Position 5 Cylinder D743659" [1] "Position 6 Cylinder CA07809" [1] "Position 7 Cylinder ND19515" [1] "Position 8 Cylinder CC71581" [1] "Position 9 Cylinder ND19677" [1] "Position 10 Cylinder CA07825" [1] "Position 11 Cylinder D801293" [1] "Position 12 Cylinder D743652" [1] "Position 13 Cylinder NA" [1] "Position 14 Cylinder NA" [1] "Position 15 Cylinder NA" [1] "Position 16 Cylinder NA" Read 16 records LIST_KNOWN: CA07857 CA07809 CC71581 CA07825 LIST_UNKNOWN: ND12042 D273561 D743657 D743659 ND19515 ND19677 D801293 D743652 Read 57 records Read 16 records Read 141 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "O2 SCL O2OFF CO2SCL CO2OFF (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 -0.83 -882.68 1.41 438.13 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 284.623487 2 0.0231284937 [2,] 284.628695 1 0.0266757904 [3,] 284.633904 2 0.0524609694 [4,] 284.649529 5 0.0315986454 [5,] 284.696406 11 0.0803779537 [6,] 284.701614 10 0.0460206638 [7,] 284.722448 6 0.0321027156 [8,] 284.727657 5 0.0272748350 [9,] 284.764116 3 0.0240916048 [10,] 284.821409 11 0.0787609872 [11,] 284.826618 10 0.0313621654 [12,] 284.837035 8 0.0307292408 [13,] 284.842243 7 0.0405103592 [14,] 284.857869 4 0.0661631932 [15,] 284.863077 3 0.0402282401 [16,] 284.868286 2 0.0200257510 [17,] 284.873494 1 0.0552039897 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 284.633904 2 642.7319204 [2,] 284.696406 11 169.7444918 [3,] 284.701614 10 914.2889919 [4,] 284.722448 6 26.2408157 [5,] 284.743282 2 876.2624853 [6,] 284.764116 3 85.3880683 [7,] 284.821409 11 102.9760531 [8,] 284.826618 10 1340.7774431 [9,] 284.837035 8 219.1955226 [10,] 284.842243 7 60.6087190 [11,] 284.857869 4 144.7779312 [12,] 284.863077 3 50.1635297 [13,] 284.873494 1 21.0187031 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2 SCL O2OFF CO2SCL CO2OFF (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.80 -895.04 1.41 438.35 [1] "plotting CO2 time series" [1] "plotting O2 time series" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "o2 slope effect zero adjustment fit did not converge for pos 8" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html" [1] "ND12042" Read 359 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "CA07857" Read 359 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D273561" Read 359 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D743657" Read 359 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D743659" Read 359 records Read 2328 records Read 141 records [1] "plotting cylinder history" Error in plot.window(...) : need finite 'xlim' values In addition: Warning messages: 1: In regularize.values(x, y, ties, missing(ties), na.rm = na.rm) : collapsing to unique 'x' values 2: In rlm.default(x, y, weights, method = method, wt.method = wt.method, : 'rlm' failed to converge in 50 steps 3: In rlm.default(x, y, weights, method = method, wt.method = wt.method, : 'rlm' failed to converge in 50 steps Read 2328 records Error in sink(log) : sink stack is full Read 2328 records Error in sink(log) : sink stack is full Read 2328 records Error in sink(log) : sink stack is full In addition: Warning messages: 1: In typeof(e[[1]]) %in% c("symbol", "character") : closing unused connection 23 (151012b.log) 2: In typeof(e[[1]]) %in% c("symbol", "character") : closing unused connection 22 (151011d.log) Read 2328 records Error in sink(log) : sink stack is full In addition: Warning message: In for (i in seq_along(cenv$extra)) { : closing unused connection 22 (151012b.log) Read 2328 records Error in sink(log) : sink stack is full Read 2328 records Error in sink(log) : sink stack is full In addition: Warning messages: 1: In for (i in seq_along(cenv$extra)) { : closing unused connection 23 (151019b.log) 2: In for (i in seq_along(cenv$extra)) { : closing unused connection 22 (151019b.log) Read 2328 records Error in sink(log) : sink stack is full In addition: Warning message: In for (i in 1:length(args)) { : closing unused connection 22 (151002a.log) Read 2328 records Error in sink(log) : sink stack is full Read 2328 records Error in sink(log) : sink stack is full In addition: Warning messages: 1: In for (i in seq_along(args)) { : closing unused connection 23 (151003a.log) 2: In for (i in seq_along(args)) { : closing unused connection 22 (151002a.log) Read 2328 records Error in sink(log) : sink stack is full Read 2328 records Error in sink(log) : sink stack is full In addition: Warning messages: 1: In append(newtodo, x) : closing unused connection 23 (151005a.log) 2: In append(newtodo, x) : closing unused connection 22 (151003b.log) Read 2328 records Error in sink(log) : sink stack is full In addition: Warning message: In for (i in seq_along(cenv$extra)) { : closing unused connection 22 (151005b.log)