Read 87300 records [1] "Analyzing 151011d.mr" [1] "Reading in data" Read 21825 records [1] "Approximately 97 jogs" [1] "Fixing CO2 glitches" Read 21825 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder ND12042" [1] "Position 2 Cylinder CA07857" [1] "Position 3 Cylinder D273561" [1] "Position 4 Cylinder D743657" [1] "Position 5 Cylinder D743659" [1] "Position 6 Cylinder CA07809" [1] "Position 7 Cylinder ND19515" [1] "Position 8 Cylinder CC71581" [1] "Position 9 Cylinder ND19677" [1] "Position 10 Cylinder CA07825" [1] "Position 11 Cylinder D801293" [1] "Position 12 Cylinder D089506" [1] "Position 13 Cylinder NA" [1] "Position 14 Cylinder NA" [1] "Position 15 Cylinder NA" [1] "Position 16 Cylinder NA" Read 16 records LIST_KNOWN: CA07857 CA07809 CC71581 CA07825 LIST_UNKNOWN: ND12042 D273561 D743657 D743659 ND19515 ND19677 D801293 D089506 Read 57 records Read 16 records Read 141 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "Processing jog 74 at position 16426" [1] "Processing jog 75 at position 16651" [1] "Processing jog 76 at position 16876" [1] "Processing jog 77 at position 17101" [1] "Processing jog 78 at position 17326" [1] "Processing jog 79 at position 17551" [1] "Processing jog 80 at position 17776" [1] "Processing jog 81 at position 18001" [1] "Processing jog 82 at position 18226" [1] "Processing jog 83 at position 18451" [1] "Processing jog 84 at position 18676" [1] "Processing jog 85 at position 18901" [1] "Processing jog 86 at position 19126" [1] "Processing jog 87 at position 19351" [1] "Processing jog 88 at position 19576" [1] "Processing jog 89 at position 19801" [1] "Processing jog 90 at position 20026" [1] "Processing jog 91 at position 20251" [1] "Processing jog 92 at position 20476" [1] "Processing jog 93 at position 20701" [1] "Processing jog 94 at position 20926" [1] "Processing jog 95 at position 21151" [1] "Processing jog 96 at position 21376" [1] "Processing jog 97 at position 21601" [1] "O2 SCL O2OFF CO2SCL CO2OFF (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 -0.81 -899.51 1.41 438.15 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 284.898771 2 0.0829540674 [2,] 284.903979 1 0.0400144455 [3,] 284.909188 2 0.0870582145 [4,] 284.914396 3 0.0203205119 [5,] 284.924813 5 0.0277693603 [6,] 284.961273 12 0.0206585515 [7,] 284.966481 12 0.0415330038 [8,] 284.982106 9 0.0392806551 [9,] 285.242530 7 0.0207921145 [10,] 285.299824 5 0.0214662460 [11,] 285.305032 6 0.0352325956 [12,] 285.357117 9 0.0221740355 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 284.898771 2 613.1656337 [2,] 284.903979 1 92.2226127 [3,] 284.909188 2 1288.2422279 [4,] 284.924813 5 58.0420981 [5,] 284.940439 8 17.5229957 [6,] 284.961273 12 200.1630907 [7,] 284.966481 12 71.7388874 [8,] 284.971690 11 138.4438791 [9,] 284.982106 9 325.4413086 [10,] 285.242530 7 44.4894813 [11,] 285.299824 5 25.8921752 [12,] 285.305032 6 715.5171531 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2 SCL O2OFF CO2SCL CO2OFF (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.80 -894.04 1.41 438.34 [1] "plotting CO2 time series" [1] "plotting O2 time series" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "o2 stagnant effect zero adjustment fit did not converge for pos 9" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html" [1] "ND12042" Read 494 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "CA07857" Read 494 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D273561" Read 494 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D743657" Read 494 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D743659" Read 494 records Read 2328 records Read 141 records [1] "plotting cylinder history" Error in plot.window(...) : need finite 'xlim' values In addition: Warning messages: 1: In regularize.values(x, y, ties, missing(ties), na.rm = na.rm) : collapsing to unique 'x' values 2: In rlm.default(x, y, weights, method = method, wt.method = wt.method, : 'rlm' failed to converge in 50 steps 3: In rlm.default(x, y, weights, method = method, wt.method = wt.method, : 'rlm' failed to converge in 50 steps Read 2328 records