Read 101700 records [1] "Analyzing 151125a.mr" [1] "Reading in data" Read 25425 records [1] "Approximately 113 jogs" [1] "Fixing CO2 glitches" Read 25425 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder ND12042" [1] "Position 2 Cylinder CA07857" [1] "Position 3 Cylinder EMPTY" [1] "Position 4 Cylinder D801299" [1] "Position 5 Cylinder D596276" [1] "Position 6 Cylinder CA07809" [1] "Position 7 Cylinder ND19515" [1] "Position 8 Cylinder CC71581" [1] "Position 9 Cylinder ND19677" [1] "Position 10 Cylinder CA07825" [1] "Position 11 Cylinder D88530" [1] "Position 12 Cylinder ND20889" [1] "Position 13 Cylinder D073419" [1] "Position 14 Cylinder D073409" [1] "Position 15 Cylinder D596277" [1] "Position 16 Cylinder NA" Read 16 records LIST_KNOWN: ND12042 ND19515 CC71581 ND19677 ND20889 LIST_UNKNOWN: CA07857 D801299 D596276 CA07809 CA07825 D88530 D073419 D073409 D596277 Read 57 records Read 16 records Read 141 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "Processing jog 74 at position 16426" [1] "Processing jog 75 at position 16651" [1] "Processing jog 76 at position 16876" [1] "Processing jog 77 at position 17101" [1] "Processing jog 78 at position 17326" [1] "Processing jog 79 at position 17551" [1] "Processing jog 80 at position 17776" [1] "Processing jog 81 at position 18001" [1] "Processing jog 82 at position 18226" [1] "Processing jog 83 at position 18451" [1] "Processing jog 84 at position 18676" [1] "Processing jog 85 at position 18901" [1] "Processing jog 86 at position 19126" [1] "Processing jog 87 at position 19351" [1] "Processing jog 88 at position 19576" [1] "Processing jog 89 at position 19801" [1] "Processing jog 90 at position 20026" [1] "Processing jog 91 at position 20251" [1] "Processing jog 92 at position 20476" [1] "Processing jog 93 at position 20701" [1] "Processing jog 94 at position 20926" [1] "Processing jog 95 at position 21151" [1] "Processing jog 96 at position 21376" [1] "Processing jog 97 at position 21601" [1] "Processing jog 98 at position 21826" [1] "Processing jog 99 at position 22051" [1] "Processing jog 100 at position 22276" [1] "Processing jog 101 at position 22501" [1] "Processing jog 102 at position 22726" [1] "Processing jog 103 at position 22951" [1] "Processing jog 104 at position 23176" [1] "Processing jog 105 at position 23401" [1] "Processing jog 106 at position 23626" [1] "Processing jog 107 at position 23851" [1] "Processing jog 108 at position 24076" [1] "Processing jog 109 at position 24301" [1] "Processing jog 110 at position 24526" [1] "Processing jog 111 at position 24751" [1] "Processing jog 112 at position 24976" [1] "Processing jog 113 at position 25201" [1] "O2 SCL O2OFF CO2SCL CO2OFF (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 -0.75 -654.34 1.32 407.57 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 330.101722 2 0.0204178270 [2,] 330.138181 7 0.0259813399 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 329.815251 2 10.16430087 [2,] 329.825668 2 10.08051504 [3,] 329.841293 6 10.21332818 [4,] 329.846502 7 9.54614767 [5,] 329.851710 8 33.01810745 [6,] 329.856919 9 19.10604451 [7,] 329.862127 10 26.52169989 [8,] 329.867335 11 27.26106716 [9,] 329.872544 12 22.57656690 [10,] 329.877752 13 23.11319237 [11,] 329.882961 14 26.79323474 [12,] 329.888169 15 21.71559277 [13,] 329.893378 15 25.35382411 [14,] 329.898586 14 29.93960593 [15,] 329.903795 13 33.67823201 [16,] 329.909003 12 35.60607093 [17,] 329.914212 11 43.26675917 [18,] 329.919420 10 32.93471627 [19,] 329.924629 9 37.88950793 [20,] 329.929837 8 26.58554051 [21,] 329.935046 7 24.90276797 [22,] 329.940254 6 29.95795749 [23,] 329.945463 5 30.04645228 [24,] 329.950671 4 32.06055602 [25,] 329.955880 2 24.75360966 [26,] 329.961088 1 21.41443609 [27,] 329.966297 1 35.27920570 [28,] 329.971505 2 26.17856141 [29,] 329.976713 4 23.22523312 [30,] 329.981922 5 20.37127171 [31,] 329.987131 6 24.22635190 [32,] 329.992339 7 19.31357214 [33,] 329.997547 8 24.77701214 [34,] 330.002756 9 19.16964994 [35,] 330.007964 10 17.11698776 [36,] 330.013173 11 12.53872585 [37,] 330.018381 12 18.76810881 [38,] 330.023590 13 15.92154703 [39,] 330.028798 14 8.59185308 [40,] 330.034008 15 11.56375233 [41,] 330.039219 15 14.73042335 [42,] 330.044428 14 15.97123635 [43,] 330.049637 13 14.87848850 [44,] 330.054845 12 10.14296805 [45,] 330.060054 11 8.32225317 [46,] 330.065262 10 17.83397993 [47,] 330.070471 9 6.43398199 [48,] 330.075679 8 8.15653434 [49,] 330.080888 7 10.58512684 [50,] 330.086096 6 14.76480997 [51,] 330.091305 5 8.46024771 [52,] 330.096513 4 6.96616190 [53,] 330.101722 2 14.53309884 [54,] 330.106930 1 5.63755439 [55,] 330.112138 1 5.20299844 [56,] 330.117347 2 14.78084544 [57,] 330.122556 4 14.30974743 [58,] 330.127764 5 7.17961232 [59,] 330.132973 6 10.60063900 [60,] 330.143389 8 5.66324156 [61,] 330.148598 9 4.30968220 [62,] 330.153806 10 12.85870103 [63,] 330.174640 14 4.43268085 [64,] 330.200686 12 4.24522250 [65,] 330.211103 10 18.79127039 [66,] 330.216312 9 6.07134963 [67,] 330.221520 8 7.68584183 [68,] 330.226729 7 9.37598149 [69,] 330.231937 6 15.90317118 [70,] 330.237146 5 12.31887375 [71,] 330.242354 4 13.14650684 [72,] 330.247562 2 14.59009520 [73,] 330.252771 1 15.92502510 [74,] 330.257979 1 8.94744313 [75,] 330.263188 2 13.12536653 [76,] 330.268396 4 6.63741166 [77,] 330.273605 5 6.00577531 [78,] 330.278813 6 11.29405017 [79,] 330.284022 7 4.50796725 [80,] 330.289230 8 6.00834515 [81,] 330.294439 9 5.91620703 [82,] 330.299647 10 16.13291359 [83,] 330.304856 11 4.67419723 [84,] 330.356940 10 11.31438820 [85,] 330.377778 6 10.40358203 [86,] 330.393403 2 15.91731902 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2 SCL O2OFF CO2SCL CO2OFF (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.76 -654.85 1.29 407.29 [1] "plotting CO2 time series" [1] "plotting O2 time series" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"