Read 108900 records [1] "Analyzing 170927a.mr" [1] "Reading in data" Read 27225 records [1] "Approximately 121 jogs" [1] "Fixing CO2 glitches" Read 27225 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder D399093" [1] "Position 2 Cylinder D88489" [1] "Position 3 Cylinder D073409" [1] "Position 4 Cylinder D399092" [1] "Position 5 Cylinder D089507" [1] "Position 6 Cylinder D548335" [1] "Position 7 Cylinder D548334" [1] "Position 8 Cylinder D596276" [1] "Position 9 Cylinder D073419" [1] "Position 10 Cylinder D399094" [1] "Position 11 Cylinder D596278" [1] "Position 12 Cylinder D073418" [1] "Position 13 Cylinder D801299" [1] "Position 14 Cylinder D88472" [1] "Position 15 Cylinder D548320" [1] "Position 16 Cylinder NA" Read 16 records LIST_KNOWN: D073409 D089507 D073419 D073418 D801299 LIST_UNKNOWN: D399093 D88489 D399092 D548335 D548334 D596276 D399094 D596278 D88472 D548320 Read 57 records Read 16 records Read 141 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "Processing jog 74 at position 16426" [1] "Processing jog 75 at position 16651" [1] "Processing jog 76 at position 16876" [1] "Processing jog 77 at position 17101" [1] "Processing jog 78 at position 17326" [1] "Processing jog 79 at position 17551" [1] "Processing jog 80 at position 17776" [1] "Processing jog 81 at position 18001" [1] "Processing jog 82 at position 18226" [1] "Processing jog 83 at position 18451" [1] "Processing jog 84 at position 18676" [1] "Processing jog 85 at position 18901" [1] "Processing jog 86 at position 19126" [1] "Processing jog 87 at position 19351" [1] "Processing jog 88 at position 19576" [1] "Processing jog 89 at position 19801" [1] "Processing jog 90 at position 20026" [1] "Processing jog 91 at position 20251" [1] "Processing jog 92 at position 20476" [1] "Processing jog 93 at position 20701" [1] "Processing jog 94 at position 20926" [1] "Processing jog 95 at position 21151" [1] "Processing jog 96 at position 21376" [1] "Processing jog 97 at position 21601" [1] "Processing jog 98 at position 21826" [1] "Processing jog 99 at position 22051" [1] "Processing jog 100 at position 22276" [1] "Processing jog 101 at position 22501" [1] "Processing jog 102 at position 22726" [1] "Processing jog 103 at position 22951" [1] "Processing jog 104 at position 23176" [1] "Processing jog 105 at position 23401" [1] "Processing jog 106 at position 23626" [1] "Processing jog 107 at position 23851" [1] "Processing jog 108 at position 24076" [1] "Processing jog 109 at position 24301" [1] "Processing jog 110 at position 24526" [1] "Processing jog 111 at position 24751" [1] "Processing jog 112 at position 24976" [1] "Processing jog 113 at position 25201" [1] "Processing jog 114 at position 25426" [1] "Processing jog 115 at position 25651" [1] "Processing jog 116 at position 25876" [1] "Processing jog 117 at position 26101" [1] "Processing jog 118 at position 26326" [1] "Processing jog 119 at position 26551" [1] "Processing jog 120 at position 26776" [1] "Processing jog 121 at position 27001" [1] "O2 SCL O2OFF CO2SCL CO2OFF (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 -0.77 -781.18 1.22 397.61 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 270.944203 14 4.62500413 [2,] 270.970245 12 108.62720027 [3,] 270.975454 11 79.72971517 [4,] 270.980662 10 119.92787784 [5,] 270.985871 9 64.49837582 [6,] 270.991079 8 53.46165070 [7,] 270.996288 7 65.28944937 [8,] 271.001496 6 73.93861753 [9,] 271.006704 5 133.97577893 [10,] 271.011913 4 86.77294801 [11,] 271.017121 3 30.80116489 [12,] 271.022330 2 124.70946629 [13,] 271.027538 1 48.78853542 [14,] 271.032747 1 59.55989364 [15,] 271.037955 2 106.93206432 [16,] 271.043164 3 21.18857704 [17,] 271.048372 4 76.73365530 [18,] 271.053581 5 138.06981029 [19,] 271.058789 6 175.16835592 [20,] 271.063998 7 115.86733467 [21,] 271.069206 8 169.21968954 [22,] 271.074414 9 213.02241776 [23,] 271.079623 10 153.96729275 [24,] 271.084831 11 126.96668647 [25,] 271.090040 12 41.98814140 [26,] 271.095248 13 228.25796247 [27,] 271.100457 14 126.77894475 [28,] 271.105665 15 191.96280018 [29,] 271.110874 15 161.59214758 [30,] 271.116082 14 42.73631941 [31,] 271.121291 13 135.47376207 [32,] 271.126499 12 112.32006185 [33,] 271.131708 11 79.45055845 [34,] 271.136916 10 121.56448148 [35,] 271.142124 9 254.33559993 [36,] 271.147333 8 75.50504405 [37,] 271.152541 7 84.83674948 [38,] 271.157750 6 79.16607184 [39,] 271.162958 5 30.27571558 [40,] 271.168167 4 21.12274166 [41,] 271.173375 3 89.75790347 [42,] 271.178584 2 61.78123146 [43,] 271.183792 1 89.35542751 [44,] 271.189000 1 17.75107983 [45,] 271.194209 2 28.08088784 [46,] 271.199417 3 120.56434940 [47,] 271.204626 4 367.99807134 [48,] 271.209834 5 89.62425715 [49,] 271.215043 6 33.79083128 [50,] 271.220251 7 35.93140822 [51,] 271.225460 8 59.56215009 [52,] 271.230668 9 217.32782335 [53,] 271.235877 10 263.68836988 [54,] 271.241085 11 563.29677732 [55,] 271.246294 12 235.13566334 [56,] 271.251502 13 311.47211019 [57,] 271.256710 14 292.42900859 [58,] 271.261919 15 222.85679952 [59,] 271.267127 15 280.95259146 [60,] 271.272336 14 291.99259286 [61,] 271.277544 13 259.81200788 [62,] 271.282753 12 248.92517414 [63,] 271.287961 11 68.74809360 [64,] 271.293170 10 51.16893884 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2 SCL O2OFF CO2SCL CO2OFF (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.77 -782.19 1.22 397.82 [1] "plotting CO2 time series" [1] "plotting O2 time series" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "o2 stagnant effect zero adjustment fit did not converge for pos 15" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html" [1] "D399093" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D88489" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D073409" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D399092" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D089507" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D548335" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D548334" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D596276" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D073419" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D399094" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D596278" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D073418" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D801299" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D88472" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D548320" Read 1666 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html"