Read 65700 records [1] "Analyzing ~/_MyStuff/data/VUV/input/160118b.mr" [1] "Reading in data" Read 16425 records [1] "AWarning messages: 1: In selcals$o2[selcals$fill == i] - selcals$o2[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 2: In selcals$gmdco2[selcals$fill == i] - selcals$gmdco2[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 3: In selcals$prs[selcals$fill == i]/selcals$prs[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 4: In selcals$o2[selcals$fill == i] - selcals$o2[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 5: In selcals$gmdco2[selcals$fill == i] - selcals$gmdco2[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 6: In selcals$prs[selcals$fill == i]/selcals$prs[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 7: In selcals$o2[selcals$fill == i] - selcals$o2[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 8: In selcals$gmdco2[selcals$fill == i] - selcals$gmdco2[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 9: In selcals$prs[selcals$fill == i]/selcals$prs[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 10: In selcals$o2[selcals$fill == i] - selcals$o2[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 11: In selcals$gmdco2[selcals$fill == i] - selcals$gmdco2[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 12: In selcals$prs[selcals$fill == i]/selcals$prs[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 13: In selcals$o2[selcals$fill == i] - selcals$o2[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 14: In selcals$gmdco2[selcals$fill == i] - selcals$gmdco2[selcals$yrdate == ... : longer object length is not a multiple of shorter object length 15: In selcals$prs[selcals$fill == i]/selcals$prs[selcals$yrdate == ... : longer object length is not a multiple of shorter object length ion 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "O2 SCL O2OFF CO2SCL CO2OFF (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 -0.76 -665.33 1.30 407.06 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 18.7459346 9 0.0293358608 [2,] 18.7563514 7 0.0323988230 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2 SCL O2OFF CO2SCL CO2OFF (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.76 -665.36 1.29 406.99 [1] "plotting CO2 timeseries" [1] "plotting O2 timeseries" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html" [1] "ND12042" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html" [1] "CA07857" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html" [1] "D88532" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html" [1] "CA07809" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html" [1] "ND19515" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html" [1] "CC71581" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html" [1] "ND19677" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html" [1] "CA07825" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html" [1] "D073419" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html" [1] "D073409" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html" [1] "D073418" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html" [1] "D089507" Read 1018 records Read 893 records Read 51 records [1] "plotting cylinder history" [1] "making html"