Read 76500 records [1] "Analyzing 170409a.mr" [1] "Reading in data" Read 19125 records [1] "Approximately 85 jogs" [1] "Fixing CO2 glitches" Read 19125 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder ND12042" [1] "Position 2 Cylinder CA07857" [1] "Position 3 Cylinder D073409" [1] "Position 4 Cylinder D596278" [1] "Position 5 Cylinder D089507" [1] "Position 6 Cylinder CA07809" [1] "Position 7 Cylinder ND19515" [1] "Position 8 Cylinder CC71581" [1] "Position 9 Cylinder ND19677" [1] "Position 10 Cylinder CA07825" [1] "Position 11 Cylinder D073406" [1] "Position 12 Cylinder D073418" [1] "Position 13 Cylinder D801299" [1] "Position 14 Cylinder NA" [1] "Position 15 Cylinder D073419" [1] "Position 16 Cylinder NA" Read 16 records LIST_KNOWN: ND12042 ND19515 CC71581 ND19677 LIST_UNKNOWN: CA07857 D073409 D596278 D089507 CA07809 CA07825 D073406 D073418 D801299 D073419 Read 57 records Read 16 records Read 82 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "Processing jog 74 at position 16426" [1] "Processing jog 75 at position 16651" [1] "Processing jog 76 at position 16876" [1] "Processing jog 77 at position 17101" [1] "Processing jog 78 at position 17326" [1] "Processing jog 79 at position 17551" [1] "Processing jog 80 at position 17776" [1] "Processing jog 81 at position 18001" [1] "Processing jog 82 at position 18226" [1] "Processing jog 83 at position 18451" [1] "Processing jog 84 at position 18676" [1] "Processing jog 85 at position 18901" [1] "O2 SCL O2OFF CO2SCL CO2OFF (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 -0.77 -789.59 1.31 397.71 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 99.7901386 2 9.59547216 [2,] 99.8005555 2 9.59717973 [3,] 99.8213895 6 9.72060805 [4,] 99.8422234 10 10.33852831 [5,] 99.8890997 10 10.38415702 [6,] 99.9099337 6 9.70082604 [7,] 99.9307676 2 9.54418538 [8,] 99.9463930 2 9.45988014 [9,] 99.9672270 6 168.18519360 [10,] 99.9724354 7 40.44559791 [11,] 99.9776439 8 96.09221256 [12,] 99.9828524 9 34.98969606 [13,] 99.9880609 10 16.68808088 [14,] 99.9932694 11 58.69426382 [15,] 99.9984778 12 38.41346563 [16,] 100.0036863 13 32.23040246 [17,] 100.0088948 15 23.12947789 [18,] 100.0141033 15 53.73414083 [19,] 100.0193118 13 14.14320734 [20,] 100.0245203 12 22.44192517 [21,] 100.0297286 11 69.08929190 [22,] 100.0349371 10 115.33156216 [23,] 100.0401457 9 93.05783585 [24,] 100.0453542 8 62.78003034 [25,] 100.0505627 7 74.34797866 [26,] 100.0557711 6 47.91368119 [27,] 100.0609796 5 56.04170309 [28,] 100.0661881 4 35.92718492 [29,] 100.0713966 3 34.63456607 [30,] 100.0766051 2 64.57932900 [31,] 100.0818136 1 80.97448084 [32,] 100.0870220 1 16.71938995 [33,] 100.0922304 2 45.10544772 [34,] 100.0974390 3 43.44839787 [35,] 100.1026475 4 28.98641435 [36,] 100.1078560 5 35.33682534 [37,] 100.1130644 6 25.65826460 [38,] 100.1182729 7 47.02078185 [39,] 100.1234814 8 37.41227445 [40,] 100.1286899 9 25.05766558 [41,] 100.1338984 10 40.32958822 [42,] 100.1391069 11 89.00561786 [43,] 100.1443153 12 59.54997505 [44,] 100.1495237 13 45.28954492 [45,] 100.1547323 15 62.74833979 [46,] 100.1599408 15 54.52003116 [47,] 100.1651493 13 53.83351915 [48,] 100.1703577 12 181.56234647 [49,] 100.1755661 11 105.03576409 [50,] 100.1807747 10 82.11386941 [51,] 100.1859832 9 124.35766514 [52,] 100.1911917 8 64.64245375 [53,] 100.1964002 7 33.56018277 [54,] 100.2016086 6 35.29017570 [55,] 100.2068170 5 83.29219638 [56,] 100.2120256 4 117.21920475 [57,] 100.2172341 3 49.71280540 [58,] 100.2224426 2 53.53634938 [59,] 100.2276511 1 120.50147327 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2 SCL O2OFF CO2SCL CO2OFF (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.77 -790.71 1.31 397.71 [1] "plotting CO2 time series" [1] "plotting O2 time series" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html"