Read 87300 records [1] "Analyzing 151010d.mr" [1] "Reading in data" Read 21825 records [1] "Approximately 97 jogs" [1] "Fixing CO2 glitches" Read 21825 records [1] "Finding cylinder IDs" [1] "Position 1 Cylinder ND12042" [1] "Position 2 Cylinder CA07857" [1] "Position 3 Cylinder D273561" [1] "Position 4 Cylinder D743657" [1] "Position 5 Cylinder D743659" [1] "Position 6 Cylinder CA07809" [1] "Position 7 Cylinder ND19515" [1] "Position 8 Cylinder CC71581" [1] "Position 9 Cylinder ND19677" [1] "Position 10 Cylinder CA07825" [1] "Position 11 Cylinder D801293" [1] "Position 12 Cylinder D743652" [1] "Position 13 Cylinder NA" [1] "Position 14 Cylinder NA" [1] "Position 15 Cylinder NA" [1] "Position 16 Cylinder NA" Read 16 records LIST_KNOWN: CA07857 CA07809 CC71581 CA07825 LIST_UNKNOWN: ND12042 D273561 D743657 D743659 ND19515 ND19677 D801293 D743652 Read 57 records Read 16 records Read 141 records Read 2 items [1] "Processing jog 1 at position 1" [1] "Processing jog 2 at position 226" [1] "Processing jog 3 at position 451" [1] "Processing jog 4 at position 676" [1] "Processing jog 5 at position 901" [1] "Processing jog 6 at position 1126" [1] "Processing jog 7 at position 1351" [1] "Processing jog 8 at position 1576" [1] "Processing jog 9 at position 1801" [1] "Processing jog 10 at position 2026" [1] "Processing jog 11 at position 2251" [1] "Processing jog 12 at position 2476" [1] "Processing jog 13 at position 2701" [1] "Processing jog 14 at position 2926" [1] "Processing jog 15 at position 3151" [1] "Processing jog 16 at position 3376" [1] "Processing jog 17 at position 3601" [1] "Processing jog 18 at position 3826" [1] "Processing jog 19 at position 4051" [1] "Processing jog 20 at position 4276" [1] "Processing jog 21 at position 4501" [1] "Processing jog 22 at position 4726" [1] "Processing jog 23 at position 4951" [1] "Processing jog 24 at position 5176" [1] "Processing jog 25 at position 5401" [1] "Processing jog 26 at position 5626" [1] "Processing jog 27 at position 5851" [1] "Processing jog 28 at position 6076" [1] "Processing jog 29 at position 6301" [1] "Processing jog 30 at position 6526" [1] "Processing jog 31 at position 6751" [1] "Processing jog 32 at position 6976" [1] "Processing jog 33 at position 7201" [1] "Processing jog 34 at position 7426" [1] "Processing jog 35 at position 7651" [1] "Processing jog 36 at position 7876" [1] "Processing jog 37 at position 8101" [1] "Processing jog 38 at position 8326" [1] "Processing jog 39 at position 8551" [1] "Processing jog 40 at position 8776" [1] "Processing jog 41 at position 9001" [1] "Processing jog 42 at position 9226" [1] "Processing jog 43 at position 9451" [1] "Processing jog 44 at position 9676" [1] "Processing jog 45 at position 9901" [1] "Processing jog 46 at position 10126" [1] "Processing jog 47 at position 10351" [1] "Processing jog 48 at position 10576" [1] "Processing jog 49 at position 10801" [1] "Processing jog 50 at position 11026" [1] "Processing jog 51 at position 11251" [1] "Processing jog 52 at position 11476" [1] "Processing jog 53 at position 11701" [1] "Processing jog 54 at position 11926" [1] "Processing jog 55 at position 12151" [1] "Processing jog 56 at position 12376" [1] "Processing jog 57 at position 12601" [1] "Processing jog 58 at position 12826" [1] "Processing jog 59 at position 13051" [1] "Processing jog 60 at position 13276" [1] "Processing jog 61 at position 13501" [1] "Processing jog 62 at position 13726" [1] "Processing jog 63 at position 13951" [1] "Processing jog 64 at position 14176" [1] "Processing jog 65 at position 14401" [1] "Processing jog 66 at position 14626" [1] "Processing jog 67 at position 14851" [1] "Processing jog 68 at position 15076" [1] "Processing jog 69 at position 15301" [1] "Processing jog 70 at position 15526" [1] "Processing jog 71 at position 15751" [1] "Processing jog 72 at position 15976" [1] "Processing jog 73 at position 16201" [1] "Processing jog 74 at position 16426" [1] "Processing jog 75 at position 16651" [1] "Processing jog 76 at position 16876" [1] "Processing jog 77 at position 17101" [1] "Processing jog 78 at position 17326" [1] "Processing jog 79 at position 17551" [1] "Processing jog 80 at position 17776" [1] "Processing jog 81 at position 18001" [1] "Processing jog 82 at position 18226" [1] "Processing jog 83 at position 18451" [1] "Processing jog 84 at position 18676" [1] "Processing jog 85 at position 18901" [1] "Processing jog 86 at position 19126" [1] "Processing jog 87 at position 19351" [1] "Processing jog 88 at position 19576" [1] "Processing jog 89 at position 19801" [1] "Processing jog 90 at position 20026" [1] "Processing jog 91 at position 20251" [1] "Processing jog 92 at position 20476" [1] "Processing jog 93 at position 20701" [1] "Processing jog 94 at position 20926" [1] "Processing jog 95 at position 21151" [1] "Processing jog 96 at position 21376" [1] "Processing jog 97 at position 21601" [1] "O2 SCL O2OFF CO2SCL CO2OFF (1ST ESTIMATE FROM MEAN FIT)" X Intercept x2 x1 -0.82 -909.06 1.46 438.57 [1] "Screened jogs for high CO2 standard deviation:" [,1] [,2] [,3] [1,] 284.011141 2 0.0413396677 [2,] 284.021558 4 0.0304841674 [3,] 284.042392 8 0.0335398689 [4,] 284.047601 9 0.0844748151 [5,] 284.052809 10 0.0509679379 [6,] 284.058018 11 0.0406655012 [7,] 284.078851 10 0.0385323218 [8,] 284.099685 6 0.0295645789 [9,] 284.104894 5 0.0612261712 [10,] 284.115313 3 0.0261122033 [11,] 284.136149 2 0.0831986346 [12,] 284.151775 5 0.0253138119 [13,] 284.162192 7 0.0342560764 [14,] 284.167400 8 0.0211087735 [15,] 284.188234 12 0.0296006454 [16,] 284.193443 12 0.0726020117 [17,] 284.198651 11 0.0290808537 [18,] 284.209068 9 0.0771492096 [19,] 284.224694 6 0.0892415934 [20,] 284.235110 4 0.0607916859 [21,] 284.240319 3 0.0246849635 [22,] 284.245527 2 0.0666329279 [23,] 284.250736 1 0.0273947356 [24,] 284.255944 1 0.0346873722 [25,] 284.266362 3 0.0455301613 [26,] 284.276782 5 0.0280595118 [27,] 284.281990 6 0.0278163784 [28,] 284.313241 12 0.0482541465 [29,] 284.323658 11 0.0824296738 [30,] 284.328867 10 0.0234828916 [31,] 284.334075 9 0.0328151733 [32,] 284.339284 8 0.0201269066 [33,] 284.354909 5 0.0249205687 [34,] 284.375743 1 0.0237391684 [35,] 284.391368 3 0.0235893457 [36,] 284.406994 6 0.0897524302 [37,] 284.412202 7 0.0351840838 [38,] 284.417411 8 0.0362169511 [39,] 284.427828 10 0.0281329564 [40,] 284.433036 11 0.0453949914 [1] "Screened jogs for high O2 standard deviation:" [,1] [,2] [,3] [1,] 284.011141 2 833.6998128 [2,] 284.021558 4 69.2434193 [3,] 284.031975 6 519.1450992 [4,] 284.047601 9 330.1593134 [5,] 284.052809 10 754.0929982 [6,] 284.078851 10 161.7312866 [7,] 284.104894 5 56.0282730 [8,] 284.136149 2 1311.1577357 [9,] 284.162192 7 15.8399732 [10,] 284.188234 12 160.7691330 [11,] 284.193443 12 189.7781569 [12,] 284.198651 11 89.7238713 [13,] 284.209068 9 298.3951305 [14,] 284.224694 6 1394.7064391 [15,] 284.235110 4 228.5377202 [16,] 284.245527 2 518.7799971 [17,] 284.255944 1 140.5678228 [18,] 284.266362 3 68.4165402 [19,] 284.313241 12 112.6913587 [20,] 284.323658 11 69.7785363 [21,] 284.328867 10 1422.7435711 [22,] 284.406994 6 1478.9080754 [23,] 284.412202 7 25.2005494 [24,] 284.427828 10 103.7576412 [25,] 284.433036 11 45.7554828 [1] "calculating fits" [1] "plotting CO2 cal parameters" [1] "plotting O2 cal parameters" [1] "calculating final numbers" [1] "O2 SCL O2OFF CO2SCL CO2OFF (2ND ESTIMATE FROM MEAN OF ALL FITS)" [1] -0.79 -886.70 1.41 438.35 [1] "plotting CO2 time series" [1] "plotting O2 time series" [1] "plotting CO2 flushing effect" [1] "plotting O2 flushing effect" [1] "o2 stagnant effect zero adjustment fit did not converge for pos 1" [1] "o2 slope effect zero adjustment fit did not converge for pos 2" [1] "plotting unknown co2" [1] "plotting unknown o2" [1] "plotting known co2" [1] "plotting known o2" [1] "plotting all variables" [1] "plotting standard deviations" [1] "plotting slopes" [1] "plotting CO2 fits" [1] "plotting O2 fits" [1] "calculating switching times" [1] "plotting co2 switching times" [1] "plotting co2 rollover" [1] "plotting o2 switching times" [1] "plotting o2 rollover" [1] "plotting co2 results" [1] "plotting o2 results" [1] "plotting average residuals" [1] "making html" [1] "making index html" [1] "ND12042" Read 2321 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "CA07857" Read 2321 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D273561" Read 2321 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D743657" Read 2321 records Read 2328 records Read 141 records [1] "plotting cylinder history" [1] "making html" [1] "D743659" Read 2321 records Read 2328 records Read 141 records [1] "plotting cylinder history" Error in plot.window(...) : need finite 'xlim' values In addition: Warning messages: 1: In rlm.default(x, y, weights, method = method, wt.method = wt.method, : 'rlm' failed to converge in 50 steps 2: In rlm.default(x, y, weights, method = method, wt.method = wt.method, : 'rlm' failed to converge in 50 steps 3: In rlm.default(x, y, weights, method = method, wt.method = wt.method, : 'rlm' failed to converge in 50 steps 4: In rlm.default(x, y, weights, method = method, wt.method = wt.method, : 'rlm' failed to converge in 50 steps 5: In lsfit(deltas * co2scl, slopes * co2scl) : 3 missing values deleted 6: In lsfit(deltas * co2scl, slopes * co2scl) : 3 missing values deleted 7: In lsfit(deltas * co2scl, slopes * co2scl) : 3 missing values deleted Read 2328 records